PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G3059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 163aa MW: 18181.1 Da PI: 9.8309 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 116 | 149 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++a +++G g W+ I +++g ++ + q++s+ qk+ Gh_D05G3059 116 LIEALRLYGRG-WRQIEEHVG-TKFAVQIRSHAQKF 149 79*********.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51445 | 7.51E-17 | 34 | 96 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF00128 | 2.2E-9 | 38 | 94 | IPR006047 | Glycosyl hydrolase, family 13, catalytic domain |
Gene3D | G3DSA:3.20.20.80 | 1.0E-14 | 38 | 97 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF00249 | 4.7E-6 | 116 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.97E-4 | 116 | 150 | No hit | No description |
SuperFamily | SSF46689 | 2.27E-5 | 116 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
GQKIQGSQSI VAKLTAFLSS GVSTASPPSI VNPPVLAACW FSSVVPSNSS VVSIHRYHVT 60 NFFAPSSRFG TPDDLKSLID KAHELGILVL MDIVHSCKYY FLIVALGTES IWWVGLIEAL 120 RLYGRGWRQI EEHVGTKFAV QIRSHAQKFF SKAHCFEFIR RFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3amk_A | 1e-13 | 57 | 96 | 235 | 274 | Os06g0726400 protein |
3aml_A | 9e-14 | 57 | 96 | 235 | 274 | Os06g0726400 protein |
3vu2_A | 1e-13 | 57 | 96 | 235 | 274 | 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic |
3vu2_B | 1e-13 | 57 | 96 | 235 | 274 | 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24866 | 1e-162 | ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5RVL3 | 9e-42 | A0A2P5RVL3_GOSBA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 1e-16 | MYB_related family protein |