PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2642
Common NameWRKY7
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 305aa    MW: 34648.6 Da    PI: 6.3185
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2642genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86.1e-25128190159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK++ +s++prsY+rCt +   gC+++k+v+r ++   +++++tY g+H+++
  Gh_D05G2642 128 VEDGHAWRKYGQKQILNSKHPRSYFRCTRKydqGCKATKQVQRLEDAgSQMFQTTYIGTHTCR 190
                  58**************************998899*********9864268***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-24119190IPR003657WRKY domain
PROSITE profilePS5081117.132123187IPR003657WRKY domain
SuperFamilySSF1182905.75E-23125190IPR003657WRKY domain
SMARTSM007745.1E-37128191IPR003657WRKY domain
PfamPF031063.8E-25129190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGSVSAWPEG VPTSNKERVI KELVNGQECA KQLQILLHNW CEKNGRLSAE ELLHKIFASF  60
DHALSLLTSV ESAEDSQNQA TSYDDSPCCN GRSEDSTNSR KKLPSKEKRG CYKRRRDEHA  120
RTVVSSTVED GHAWRKYGQK QILNSKHPRS YFRCTRKYDQ GCKATKQVQR LEDAGSQMFQ  180
TTYIGTHTCR PDSFKAPQII IDSEPRESYN KFSYGSSNPK IPTKKLHEIT PPVKQETKEE  240
TPTTSGLTDM DSVVMWKDII GAEYGDVVSN VYTSTEITSQ NLELDLVMKP VEFEDDFQFD  300
ESELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-23122190269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199115RKKLPSKEKRGCYKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.64080.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697760.0KF669776.1 Gossypium hirsutum WRKY transcription factor 7 (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313870.10.0probable WRKY transcription factor 70
TrEMBLA0A1U8J9410.0A0A1U8J941_GOSHI; Transcription factor
STRINGGorai.009G292600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-45WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]