PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 414aa MW: 44642.9 Da PI: 6.924 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 190 | 239 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a++k++g Gh_D05G2316 190 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALKFRG 239 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-33 | 190 | 248 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 190 | 248 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-14 | 190 | 239 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-38 | 190 | 253 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.791 | 190 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 191 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.83E-16 | 198 | 249 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 213 | 229 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MCLIDKVAHR GGSSGYARFP PAGDAGGADE QQEYYSQSSR NRQVNQAMMQ QRNQGVMFLG 60 SQSQASEMST MVSALAHVAS GQRAGDWGYG GNVAGEVSSG FGLSGPSADS PSASGLWIGQ 120 KRGREDEASA QLVESAAPRV QRSFADFRGS HADSSSAATS VAEETTSIVA PAAETAAAAA 180 YEETGERRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF DTAEAAARAY DEAALKFRGS 240 RAKLNFPELV RLAPQPMQNF PATQTSISSS LTTQFRPPYS TPLPSLYQSQ HLHSPTADML 300 RDYWQYSQLL QSSTDFHGQE ATSLMEQMMQ SSQLPNFQHP FLSSSLSPFP SSFVAPSAAA 360 SSSSSSSASF PLAFGEHQQF DVFRQPSNQS QASGSDFPVP PWSHPSHYPS STGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 191 | 250 | 6 | 66 | ATERF1 |
3gcc_A | 2e-22 | 191 | 250 | 6 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 190 | ERRRRY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582387 | 1e-46 | JX582387.1 Gossypium hirsutum clone NBRI_GE15207 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698883.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A1U8KD55 | 0.0 | A0A1U8KD55_GOSHI; ethylene-responsive transcription factor ABR1-like | ||||
STRING | Gorai.009G255400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15224 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-20 | ethylene response factor 110 |