PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2299
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 208aa    MW: 23209.6 Da    PI: 7.3618
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2299genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99.6e-382479661
       zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                  +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ 
  Gh_D05G2299 24 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 79
                 68**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-25869IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5092478IPR003851Zinc finger, Dof-type
PfamPF027013.0E-322478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLQCAPRPML AIDRNWKSNA ELAPNCPRCA SANTKFCYYN NYSLSQPRYF CKGCRRYWTK  60
GGSLRNVPVG GGCRKSRRGK SNRVDKNGAQ VSTNYSKNLT SFGTHQEHMM GATTSHGDTG  120
NQPGPATTTG SDIDLAVIFA QFLNQSTSSD QPEIILTQEW PNEGMDPWSC LEQDTNSQND  180
SSMELPVVHT IPESYNMLQE MPQVEQHX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.210331e-163boll
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733900.11e-157PREDICTED: dof zinc finger protein DOF1.2-like
SwissprotP683498e-42DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLA0A1U8N4K31e-156A0A1U8N4K3_GOSHI; dof zinc finger protein DOF1.2-like
TrEMBLA0A2P5R1B41e-156A0A2P5R1B4_GOSBA; Uncharacterized protein
STRINGGorai.009G252800.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.13e-36Dof family protein