PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 255aa MW: 27568.5 Da PI: 7.232 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.7 | 1.2e-32 | 56 | 111 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eC+kNhA+s+Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e++ Gh_D05G2128 56 GIRYRECQKNHAVSIGGHALDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKETDG 111 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-22 | 56 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.3E-30 | 57 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-29 | 58 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.313 | 59 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.74E-21 | 179 | 253 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-31 | 182 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.4E-27 | 192 | 249 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDFEEHDDQD EEMGMAVPAG YDSLGNSSAP RSKIGPAASG GEGAAASAPP RKVGSGIRYR 60 ECQKNHAVSI GGHALDGCGE FMAAGDEGTL DALKCAACNC HRNFHRKETD GEGSSIYNPH 120 HHHHHYQQHP QFSPYYRAPP PAGYLHLTPQ QRPLALPAAS GGGIAGGYSR EDEDVSNPSS 180 SAGGGGGSGG LKKRFRTKFT PEQKDKMLGF AERLGWRIQK HDEAAMEQFC EETGVQRQVL 240 KVWMHNNKYT LGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-29 | 193 | 248 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2904 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687119.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9SB61 | 2e-78 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1U8JFR1 | 0.0 | A0A1U8JFR1_GOSHI; zinc-finger homeodomain protein 2-like | ||||
STRING | Gorai.009G231800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-71 | homeobox protein 22 |
Publications ? help Back to Top | |||
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