PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WOX | ||||||||
Protein Properties | Length: 215aa MW: 24926.3 Da PI: 9.9439 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.8 | 2.8e-21 | 78 | 137 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Gh_D05G1962 78 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEKITAQLgkygKIEGKNVFYWFQNHKARERQ 137 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.7 | 5.2e-38 | 78 | 138 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqk Gh_D05G1962 78 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEKITAQLGKYGKIEGKNVFYWFQNHKARERQK 138 8***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.074 | 73 | 138 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-12 | 73 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.0E-7 | 75 | 142 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.1E-19 | 78 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.20E-5 | 78 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 79 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKVHQLARGF WEHEPSLSLG CKRLRPLAPK LQQHTSSTDT VSSFDLKSFI RPESGPRKLG 60 PSDQKRDSPQ VETHPGGTRW NPTQEQIGIL EMLYRGGMRT PNAQQIEKIT AQLGKYGKIE 120 GKNVFYWFQN HKARERQKMK RNSLGLTNCP RNSPPITTIT LDTRMEIMER SDEDSPYKRK 180 CKSWSFEYLD EQSISPCKEQ ENRTLELFPL HPEGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.14553 | 0.0 | boll| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448361.1 | 1e-161 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Refseq | XP_016687771.1 | 1e-161 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 8e-76 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A0D2QKM4 | 1e-159 | A0A0D2QKM4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JBT5 | 1e-159 | A0A1U8JBT5_GOSHI; WUSCHEL-related homeobox 4-like | ||||
STRING | Gorai.009G214200.1 | 1e-160 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5980 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 3e-78 | WUSCHEL related homeobox 4 |