PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1960
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 281aa    MW: 31594.6 Da    PI: 7.0028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1960genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.62.3e-27281612128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                  ppG+rF P++eel+++yL+ k ++   + ++     +i+e+++y+++P+dLp+       +  + ++ ++F+ +++k   g r +r +k g+W++ gk
  Gh_D05G1960  28 PPGCRFYPSEEELLNHYLTGKNSSVAADRSDaygsdFIRELHLYDYKPSDLPEgacfvhGY--KGRRRHWFCYTKSK---GGRGRRRAKGGFWRKIGK 120
                  9******************998877733333334438***************556664322..44556667766554...6788888899******** PP

          NAM  89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                   ++v++ ++ + g+++ +vfy+  + + +++t W+m ey+l
  Gh_D05G1960 121 VRDVFDGGNVKLGTRTKFVFYEMnSVKAAVRTPWIMYEYAL 161
                  ******99999**********762566678*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-3224177IPR003441NAC domain
PROSITE profilePS5100534.34227177IPR003441NAC domain
PfamPF023651.0E-1628161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSNNQNSNLP LIDIGGGSSR ASSPYHFPPG CRFYPSEEEL LNHYLTGKNS SVAADRSDAY  60
GSDFIRELHL YDYKPSDLPE GACFVHGYKG RRRHWFCYTK SKGGRGRRRA KGGFWRKIGK  120
VRDVFDGGNV KLGTRTKFVF YEMNSVKAAV RTPWIMYEYA LLHRHKASFV LCRVFIKSRA  180
RNSVSENVLS CAEEAVSAIR HIGIQHDGFL RPDTLEAEIN GDDFTKELDD PITIGPVSVA  240
SFEFPSGIPP DLPDDMVGPR LTTSELLSIV EEDFMELDDL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-14211789169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687769.10.0PREDICTED: NAC domain-containing protein 90-like
RefseqXP_016687770.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A1U8JHH80.0A0A1U8JHH8_GOSHI; NAC domain-containing protein 90-like
STRINGGorai.009G214000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-14NAC family protein