PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1900
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 381aa    MW: 43306 Da    PI: 6.867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1900genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16341091394
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +++l +p kfa+++ +k   + t+t++ +sg  W++ l  +  +++ ++ +GW++Fv ++ L+e+D ++Fk++g s f   v
  Gh_D05G1900  34 LHQLEIPEKFAKNIRKK--LPETVTVKGPSGIIWDLGL--TADGDTLFFNDGWRNFVLDHSLEENDLLIFKYNGLSHF--DV 109
                  57899******888755..8889***************..99999**************************9886776..44 PP
2B3491.1e-15265346185
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  f  v++p +v ++  + +p   +++h +k+++  +++l   + r+W+ +++y k+++   l++GWk Fv++n+L e D++vF+ +
  Gh_D05G1900 265 FMVVMKPTHVWRRFYMAIPVAWTAKHHLKENT--DIIL-RINKRTWRTRYNYHKNRDCGGLSGGWKCFVNDNNLIEYDVCVFEPS 346
                  778999********************999655..5664.4688*******9977777778**********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.08E-2021113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.78922115IPR003340B3 DNA binding domain
CDDcd100172.24E-1824112No hitNo description
Gene3DG3DSA:2.40.330.104.0E-1924113IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-1425115IPR003340B3 DNA binding domain
PfamPF023621.4E-1335107IPR003340B3 DNA binding domain
PfamPF023622.9E-13265346IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56265363IPR003340B3 DNA binding domain
SMARTSM010192.0E-13265358IPR003340B3 DNA binding domain
CDDcd100175.50E-20265361No hitNo description
SuperFamilySSF1019361.12E-17265353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-18265347IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP  60
SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK  120
GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP  180
INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TEFDGAIMDE GDFSPHPTCY  240
NGPLTQFEKA NAIAKAQEAL TRDGFMVVMK PTHVWRRFYM AIPVAWTAKH HLKENTDIIL  300
RINKRTWRTR YNYHKNRDCG GLSGGWKCFV NDNNLIEYDV CVFEPSNIGG KPIILDVIII  360
RVLDSAVQAP VPLTITHPAS C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.257280.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445060.10.0PREDICTED: B3 domain-containing protein REM16-like isoform X1
TrEMBLA0A0D2UR560.0A0A0D2UR56_GOSRA; Uncharacterized protein
TrEMBLA0A2P5Q9550.0A0A2P5Q955_GOSBA; Uncharacterized protein
STRINGGorai.009G207400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-72B3 family protein