PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1843
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 299aa    MW: 32627.7 Da    PI: 8.4969
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1843genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.94.8e-3392147460
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  vrY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e
  Gh_D05G1843  92 VRYRECLKNHAASIGGNVYDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 147
                  89*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-2584145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-3092144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-3193144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.90994143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.52E-16225292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29234294IPR009057Homeodomain-like
TIGRFAMsTIGR015655.2E-27235292IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEVRGQEHDI KTPGSSAFGL HSPGVERRKD GNHNGTAVLT CTQTLDHVHH LQRQQSLGQG  60
RSPHPDRVAA ATGAAAVAPI SVGSNAKPSS FVRYRECLKN HAASIGGNVY DGCGEFMPSG  120
EEGTLEALKC AACDCHRNFH RKEVDGETQI GANPSRTLIL NPLQLPPPLP SPTMLHPHHK  180
YSIHTSPSSA IVASMNNMAF GSGGGGGNES SSEDLNVFQS NADGVPPPPP YVLSKKRFRT  240
KFTQEQKDKM LELAEKVGWR INKQDEEEVQ KFCAEYGVKR QVFKVWMHNN KNVKKPPPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-242342921674ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.101580.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687581.10.0PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_016687582.10.0PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9FRL57e-68ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A1U8JB950.0A0A1U8JB95_GOSHI; zinc-finger homeodomain protein 5-like
TrEMBLA0A2P5RFE40.0A0A2P5RFE4_GOSBA; Uncharacterized protein
STRINGGorai.009G201300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-65homeobox protein 33