PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 206aa MW: 22162.6 Da PI: 8.2584 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.3 | 1.5e-09 | 103 | 127 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP G + +C++C tV Gh_D05G1541 103 CGSCRQLLSYPEGTRQAKCSCCETV 127 ************************9 PP | |||||||
2 | zf-LSD1 | 35.8 | 1.4e-11 | 141 | 165 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C lL+YP+G++sV+C++C V Gh_D05G1541 141 CDSCALLLMYPYGSSSVKCSSCLSV 165 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.6E-14 | 100 | 130 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.7E-7 | 103 | 127 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-9 | 138 | 166 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.3E-8 | 141 | 165 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAAAMSLSTT KVHKKLVFYP RAPGLTFSPT AVSADFFPDL TRIPCRIVLT QVSSFSSHLS 60 SRPPPPLVFS GSDPYPVSDR VDTSTASQIA PSPEMAQMAQ MVCGSCRQLL SYPEGTRQAK 120 CSCCETVNFV LEAHQVGLVR CDSCALLLMY PYGSSSVKCS SCLSVTEIGG LQTLSDKAFA 180 FWNFAVSSFK AVLTLQSAKI IGNFSF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18391 | 0.0 | boll| ovule| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243102 | 2e-58 | AC243102.1 Gossypium arboreum clone GM226J06-jme, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5QMH7 | 5e-78 | A0A2P5QMH7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G169900.1 | 6e-72 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13611 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 6e-26 | lsd one like 2 |