PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1534
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 165aa    MW: 18879.8 Da    PI: 10.4091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1534genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-101361555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                  + +Er+RR +++  ++eL +llP     +s+   s  + L +A+ YIk+Lq
  Gh_D05G1534 13 RKVIERNRRTQMKALYSELYSLLPRH---SSREsKSLPDQLHEATSYIKKLQ 61
                 689**********************7...444448889*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.185860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.18E-111075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-111079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-41365No hitNo description
PfamPF000103.0E-61461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00691466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNDNPNVSSR PDRKVIERNR RTQMKALYSE LYSLLPRHSS RESKSLPDQL HEATSYIKKL  60
QINLERMKEK KDSLMSVERL RNTRSRMTGK VPKSPQIQIH EMGSSLVIGL TTESNSRFLF  120
TQTIRVLQEE GAEIVNAGFS VVDDTVFHII NLTVAIVLLP LFINA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850515e-62JX585051.1 Gossypium hirsutum clone NBRI_GE18508 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684720.11e-111PREDICTED: transcription factor bHLH36-like isoform X1
SwissprotF4JIJ73e-40BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A2P5QXP51e-114A0A2P5QXP5_GOSBA; Uncharacterized protein
STRINGGorai.009G169200.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-42bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]