PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1502

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 277aa MW: 31029.6 Da PI: 8.324

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1502	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.1	2.8e-33	14	107	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC+++Cv+ap fpa+++++f+ vhk+FG++n++ +l+ ++er++a++sl +eA a+++dPv+G +g++++l+++l++l+ l Gh_D05G1502 14 ACAACKHQRRKCESNCVFAPFFPASRAESFREVHKIFGVKNMTGILTPRTPDERKKAVESLEWEALAWTQDPVRGPLGLFRRLEEELQHLNDLL 107 7**************************************************************************************9988655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.517	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-31	14	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MSNGEEAAPN TRHACAACKH QRRKCESNCV FAPFFPASRA ESFREVHKIF GVKNMTGILT 60 PRTPDERKKA VESLEWEALA WTQDPVRGPL GLFRRLEEEL QHLNDLLDQL VEPYQQNQMN 120 SAGLNGFNHN SVTGRVIVPN SNINATNIGY GSNPYLGIDV PPIDNYDGVP PISSDGLNEN 180 QLVVNDYFPG YYGIPDRLAV FRESGGVDNV AQTSTPSPTL PPKQETMAQR NQIWGPSRRP 240 LTNNHFPLRN HRRGSQQRYQ YGVLQRPASQ SQGRGLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-22	7	108	1	105	LOB family transfactor Ramosa2.1
5ly0_B	3e-22	7	108	1	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016732971.1	0.0	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	A0A1U8N1L1	0.0	A0A1U8N1L1_GOSHI; LOB domain-containing protein 6-like
STRING	Gorai.009G165600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19603	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	9e-27	LOB domain-containing protein 2