PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1466

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 273aa MW: 31071.6 Da PI: 6.5871

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1466	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.6	8.6e-16	85	114	2	31
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPkt 31 prlrWtp+LH +Fv+ave+LGG+++AtPk+ Gh_D05G1466 85 PRLRWTPDLHLSFVHAVERLGGQDRATPKH 114 8****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-12	81	114	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-9	85	114	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MMEMHGEEKR VNSEVCSHKC TNFDLNEEAS CQDNDYVGKE VSVEEEEIEK RSTEEGSSSN 60 NNGGEGGGIN DRRRTVRQYV RSKLPRLRWT PDLHLSFVHA VERLGGQDRA TPKHHLEPNS 120 LISKAGVEKN GFPKAGGLLS NEGQSNQIHG MEIRIGGMRR GWVLEEKRWQ MICNRWEIER 180 EMSKHTFIGG HYSTSSTQGN NTSTVGQFVS DNLSKFTSEF DAPFLVELNQ DKVMDREWLP 240 DLQLRLSQRI GIEDKKNTHC KGTHDINTRL SLS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19475	1e-171	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447941.1	1e-114	PREDICTED: two-component response regulator ARR10-like
TrEMBL	A0A2P5RFI8	1e-113	A0A2P5RFI8_GOSBA; Uncharacterized protein
STRING	Gorai.009G161800.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-17	G2-like family protein