PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1379

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 349aa MW: 39020.3 Da PI: 9.2057

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1379	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.3	3.5e-17	23	102	2	73
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er rgk + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++ Gh_D05G1379 23 WTVNETMVLIEAKKMDDERRMkrsgdiegRGKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRIAE 102 ***********977666662222222224799************************************99988644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.12	15	87	IPR017877	Myb-like domain
Pfam	PF13837	2.0E-13	22	98	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MKLVMADQGV DNIVTREYRK GNWTVNETMV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW 60 KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRI AERGEGTHSN EGSSYWEMEK 120 NERKVKNLPS NMLRLIYERL EEVVEKKGDQ TAVAAGGSGL IPNIPYVMDR PITSVETSLP 180 PLLQHQLLAP IPAAIPLTLP APPQLPPPPI AAAAAAPLVQ PSPLSYAQPL PTVDSDTSEY 240 SDSPAKRRKR GTGNGEGSSG GTTSANNSNE VGTAISKSAS IIAEAIQASE EREERRHKDL 300 VSLHERRLKM EESKTEMDKR GLDGLVDAIN KLANSILALI THKKQSAPK

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MKLVMADQGV DNIVTREYRK GNWTVNETMV LIEAKKMDDE RRMKRSGDIE GRGKPTELRW  60
KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRI AERGEGTHSN EGSSYWEMEK  120
NERKVKNLPS NMLRLIYERL EEVVEKKGDQ TAVAAGGSGL IPNIPYVMDR PITSVETSLP  180
PLLQHQLLAP IPAAIPLTLP APPQLPPPPI AAAAAAPLVQ PSPLSYAQPL PTVDSDTSEY  240
SDSPAKRRKR GTGNGEGSSG GTTSANNSNE VGTAISKSAS IIAEAIQASE EREERRHKDL  300
VSLHERRLKM EESKTEMDKR GLDGLVDAIN KLANSILALI THKKQSAPK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2547	1e-125	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016688331.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X1
TrEMBL	A0A1U8JDE2	0.0	A0A1U8JDE2_GOSHI; trihelix transcription factor ASR3-like isoform X1
STRING	Gorai.009G150000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-59	Trihelix family protein