PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1306
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 268aa    MW: 29577.4 Da    PI: 9.3439
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1306genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +++++G+g Wk I +        ++R+  ++k++w+++
      Gh_D05G1306  5 KQKWTAEEEEALLAGITKHGPGKWKNILKDPEfapflTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.855161IPR017930Myb domain
SuperFamilySSF466893.09E-16259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-15456IPR009057Homeodomain-like
SMARTSM007172.7E-8459IPR001005SANT/Myb domain
PfamPF002491.3E-8556IPR001005SANT/Myb domain
CDDcd116601.91E-21656No hitNo description
SuperFamilySSF467853.21E-16113195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.2E-17114179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.6E-14116182IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.671116184IPR005818Linker histone H1/H5, domain H15
PfamPF005384.3E-11118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGI TKHGPGKWKN ILKDPEFAPF LTHRSNIDLK DKWRNLSVST  60
STQGARDKSR APKVKAIVAS LPNTPNSSAP VASRAHNVTS GTVVGDSSNN GIDGKNAPRY  120
NTMIFEALST IKDTNGCDIS AIVSYIEQRH EVPPNFRRLL SSRLRRLVSQ GKLEKVQNCY  180
KIREDTLMGT ETPTPKQKDV RLRQNSGAIG SGETVEEAAI TTAYKVAEAE NKSFLAAEAV  240
KEAERVSKMA EDTDSMLQLV KEIYEQCM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.160620.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016688434.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L11e-85TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A1U8JJF50.0A0A1U8JJF5_GOSHI; telomere repeat-binding factor 4-like
STRINGGorai.009G143000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-88MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]