PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1260

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 238aa MW: 26315 Da PI: 4.7283

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1260	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	54	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Gh_D05G1260 54 PSYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 104 57***998.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.12E-31	54	114	No hit	No description
Pfam	PF00847	8.1E-13	54	104	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.8E-32	55	113	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.367	55	112	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.42E-21	55	113	IPR016177	DNA-binding domain
SMART	SM00380	2.5E-36	55	118	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-10	56	67	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-10	78	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MTKPNHSSSS EAESWSSNNT NNSNSSSPTS SSSETVLSRK LNGKRGRDTS SKHPSYRGVR 60 MRSWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGDSAILN FPDLTEFLPR 120 PVSLLPRDIR AAAVKAASMV NFNAMTSSPS SSSVVSESSS LSESNASDEP EELSEIVQLP 180 NIEGNFDSLF DSQNEFILLD SVDGWVYPPQ DFYGGFYDQI WVTENLTAAS FETTFLWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-21	46	112	5	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP780188	0.0	KP780188.1 Gossypium hirsutum C-repeat binding factor 5 (CBF5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445734.1	1e-172	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	3e-59	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0D2S0C4	1e-170	A0A0D2S0C4_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5VPN2	1e-170	A0A2P5VPN2_GOSBA; Uncharacterized protein
STRING	Gorai.009G136500.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-59	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]