PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 360aa MW: 41162.8 Da PI: 8.5631 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.5e-06 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Gh_D05G1175 62 ECQECGATFRKPAHLKQHLQSH 83 5*******************99 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.3e-05 | 89 | 113 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C dC+ s++rk++L+rH+ H Gh_D05G1175 89 FVCLvdDCHASYRRKDHLNRHLLQH 113 899999***************9887 PP | |||||||
3 | zf-C2H2 | 12.2 | 0.00054 | 118 | 143 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+ F + n+krH + H Gh_D05G1175 118 FSCPieTCNSKFAFQGNMKRHVKEfH 143 89********************9988 PP | |||||||
4 | zf-C2H2 | 20 | 1.8e-06 | 158 | 182 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ +s Lk+H +H Gh_D05G1175 158 YVCQevGCGKVFKFSSKLKKHEDSH 182 99*******************9888 PP | |||||||
5 | zf-C2H2 | 15.7 | 4.3e-05 | 249 | 273 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C +Fs+ksnL++H + H Gh_D05G1175 249 KCDfgGCLHTFSTKSNLRQHVKAvH 273 688889**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.224 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 28 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.713 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.3E-8 | 62 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.21E-9 | 73 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-9 | 88 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.016 | 89 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 89 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.52E-5 | 116 | 144 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 116 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.16 | 118 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 118 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-8 | 153 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.24E-5 | 154 | 182 | No hit | No description |
SMART | SM00355 | 0.015 | 158 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 158 | 187 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.9 | 190 | 215 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 192 | 215 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 18 | 218 | 239 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.2E-6 | 229 | 270 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.04E-7 | 230 | 286 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 248 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0017 | 248 | 273 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 250 | 273 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 272 | 301 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 3.8 | 279 | 305 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 281 | 305 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MDEEKGERVS GPIFKDIRRY FCDHCGICRS KKSLITTHIL THHPEKIDNG GKEEEKVSTS 60 NECQECGATF RKPAHLKQHL QSHSLERPFV CLVDDCHASY RRKDHLNRHL LQHQGKLFSC 120 PIETCNSKFA FQGNMKRHVK EFHDEDSSSS DAASQKQYVC QEVGCGKVFK FSSKLKKHED 180 SHVKLDSVEA FCSEPSCLKY FTNEQCLKAH VQSCHQYINC QICGAKQLKK NIKRHLRSHE 240 SGVASERIKC DFGGCLHTFS TKSNLRQHVK AVHEELKPFA CSFSGCGMRF SYKHVRDNHE 300 KSALHVYVPG DFIESDEQFQ SRPRGGRKRT CPTVEMLIRK RVAPPQMDTM MDPGSIQGCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 9e-16 | 65 | 210 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 9e-16 | 65 | 210 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688940.1 | 0.0 | PREDICTED: transcription factor IIIA-like isoform X1 | ||||
Refseq | XP_016688941.1 | 0.0 | PREDICTED: transcription factor IIIA-like isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-152 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A1U8JFC6 | 0.0 | A0A1U8JFC6_GOSHI; transcription factor IIIA-like isoform X1 | ||||
STRING | Gorai.009G128000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4714 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-119 | transcription factor IIIA |