PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1143
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 271aa    MW: 29541.8 Da    PI: 8.4836
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1143genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022107129123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Gh_D05G1143 107 FSCNYCQRKFYSSQALGGHQNAH 129
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-6103135No hitNo description
PROSITE profilePS5015711.427107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKPPKPSEPS LSETSTIISV SPAATLTTSA HDKTTLKQDK QPAAEAKEEA THHQGVDDDL  60
VLDLRLSNRD QSNPELNFID CFKADLSGDQ DSSELPPQGN ETEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTLAKQGQ RLGGGAAAAS LSAFGYPNTH PSRYSSLASL PLYGSFNKAL  180
GIREHSMIHK PSLVPSAHVY GHNGWSRRAV DQTRAVGHVS NLQGINGTAK FQGSVGKFGP  240
ATEGMNGHWW DTVNHFNNKK DELKLDLSLK L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3940975e-66GQ394097.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1062 SSR marker CGR6530 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016688901.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A1U8JF850.0A0A1U8JF85_GOSHI; zinc finger protein 1-like
STRINGGorai.009G124600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-36zinc-finger protein 1