PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 316aa MW: 34903.1 Da PI: 8.4455 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94 | 1.1e-29 | 164 | 222 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d++vv+ tYegeHnh Gh_D05G1137 164 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSIDDQSVVIATYEGEHNH 222 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.1E-29 | 154 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.016 | 159 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-25 | 161 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-34 | 164 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-24 | 165 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDTSSWVDTS LDLNPSSDRP LPLDTPKKEP SGNGNLIVFG KKLSMKEESG ALVEELNRVN 60 EENKKLTEML AAMCESYNAL QSQLTNLMSK IPEKELSHSK KRKSESSNNN HNNNNDNYNF 120 GIIGNSESSS TDEDSCKKPK EEIIKAKVSR VYVRTEASDT SLVVKDGYQW RKYGQKVTRD 180 NPSPRAYFKC SFAPTCPVKK KVQRSIDDQS VVIATYEGEH NHLPPPQMEP TSGSSHRGSA 240 SLNPSGPTMT LDFGKTKPSG SDVARICSSS QPKMDSPQVR QYLVEQMATS LTKDPKFTAA 300 LAAAISGRMF QQSPVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-20 | 149 | 226 | 1 | 75 | WRKY transcription factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3743 | 2e-94 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73859364 | 2e-94 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438459 | 0.0 | KM438459.1 Gossypium aridum WRKY28 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688892.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 5e-95 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U8JEZ7 | 0.0 | A0A1U8JEZ7_GOSHI; probable WRKY transcription factor 40 | ||||
STRING | Gorai.009G124000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-84 | WRKY DNA-binding protein 40 |