PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0921
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 701aa    MW: 77562.4 Da    PI: 8.6982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0921genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07583633148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++l
      Gh_D05G0921 583 RRPFSIAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTLL 633
                      567888899*****************9988889**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.76E-6387477IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.922578637IPR017930Myb domain
SMARTSM007174.1E-6582635IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10583634IPR009057Homeodomain-like
SuperFamilySSF466895.13E-16584665IPR009057Homeodomain-like
CDDcd116601.83E-17584634No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPTIP RATRSARKRV PFRKRVEGNR ISAFDLLATV AGTLLLDKES  60
SPASNNAWNA EDQSAVEKNN VKEERQDGDQ SLKLETCNVS ELVPQTNDPN YSSRESPSLQ  120
NGTQFGVTSA ITTSERLDSQ KLINGKIKNE MGGLACKVET GPFVSRTPGD CVEPVSENKV  180
LTDEELDRTN KASSGEVADK CPLEDPLVLD GKPPAVVSSD SSIKAPSFGE HDPFISFPIQ  240
QYDVNVVSRD DDEKSSGCTH PSPIREPFRS TPRIGDRRIR KILASRYWKV ALRSKNATYS  300
NYDENLKSGY CNRSTYKRLR SGRNFPFKKR KFLHYTSESN SDGGTIGEGI SDLPEKNING  360
KASILYSKMH GVTGESSSLA DQRKSFNSRD PHVKLRIKSF RVPELFIEIP ESATVGSLKR  420
TVKEAVTAIL GGGLCVGVLL QGKKVRDDNK TLLQTGISRD NQMDSLGFSL EPNPSHTSPS  480
LCPGGSPLTL PHDIPLPLAR YPANPGLVNQ VTCHPSTEPC IPNACDFIES NNDCMASPTD  540
MFDKSTTESK ALVAVPAMSV EALAAVPVHK KSKQSEVAQR RIRRPFSIAE VEALVQAVEK  600
LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLLHTARISP QQRRGEPVPQ ELLDRVLNAH  660
TYWSQQQAKQ QQQQLPESCL PHYNSTMIGS GRCDDDENIL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-565676711105Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.164380.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9643741e-65JX964374.1 Gossypium hirsutum clone NBRI_TRANS-643 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444989.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444990.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444991.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444992.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444993.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444994.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A0D2TGQ10.0A0A0D2TGQ1_GOSRA; Uncharacterized protein
STRINGGorai.009G098300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-142TRF-like 2