PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G0867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 76150.4 Da PI: 6.0217 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1.1e-06 | 279 | 299 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg Gh_D05G0867 279 PCPEFRK-GSCRQGDNCEYAHG 299 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.33E-14 | 72 | 150 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.097 | 75 | 105 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.937 | 75 | 150 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.9E-8 | 75 | 142 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.3E-15 | 76 | 150 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.44E-13 | 77 | 150 | No hit | No description |
PROSITE profile | PS50088 | 12.235 | 110 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0012 | 110 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 5.0E-5 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 278 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.094 | 279 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 279 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 307 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.174 | 309 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 309 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MCSGPKRKPT QTGLTMEGES RKEDEVPQKF SVLLELSASN DLIGFKISVE EGGHDMDEAG 60 LWYGRRLGSK KMGFEERTPL LIASLFGSQD VVNYIVERGR VDVNRACGSD GATALHCAAA 120 GGSFYSPEIV KILLDASADI DSLDANGNRP GDLIAPACNP AFGLRKKRLE SLLKGSDCVG 180 EIEGLPAQLG NEMGGLEEQE GSMPRVSKDG TEKKEYPVDL TLPDIKNGIY GTDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDNCEYAHGI 300 FECWLHPAQY RTRLCKDETN CTRRVCFFAH KPEELRPLYA STGSAVPSPR SYSAAGSSLD 360 MGSMSPLALG SPSVMIPPTS TPPLTPTGAS SPMGGSMWPS QSNIIPPTLQ LPGSRLKTTL 420 SARDMDLDME LLGLECRRRR QQQQQLIDEI SGLSSPTSWN NSTAFSAAGD RTGELNRFGG 480 VKPTNLDDIF GSLDPSIMPQ IQGLSLDAAA SQLQSPTGVH TRQNINQQLR ASYPTNLPSS 540 PVRASSSFGI DPSGPSAAAV LSSRSSAFAK RSQSFIERTA VNRHSGLSSP ASSASAMPSN 600 LSDWGSPDGK LDWGIQGEEL NKLRKSASFG FRSSGSNLGN APRSISSTTD EPDVSWVQSL 660 VVDPPPAGQL SFEEEQCHRN PGGAEMLPAW VEQLYMDQKQ MVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.5371 | 0.0 | boll| ovule |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX577578 | 1e-163 | JX577578.1 Gossypium hirsutum clone NBRI_GE9431 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016689164.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1U8JLH7 | 0.0 | A0A1U8JLH7_GOSHI; zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
STRING | Gorai.009G091200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |