PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0788
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 721aa    MW: 78798.1 Da    PI: 7.3725
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0788genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-094274641954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Gh_D05G0788 427 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 464
                  554458******************************88 PP
2BELL114.84.5e-37290360171
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                  +rqelq+kkakL+++l+eV++rY+qy++q+qtv++sFe++a lg+ak+Yt+lAl++iS++FrcLkdai+ q
  Gh_D05G0788 290 QRQELQMKKAKLVNMLDEVEQRYRQYHHQMQTVVASFEQAARLGAAKSYTALALQTISKQFRCLKDAISCQ 360
                  69******************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-64216359IPR006563POX domain
PfamPF075262.1E-49221358IPR006563POX domain
PROSITE profilePS5007111.774405468IPR001356Homeobox domain
SMARTSM003896.1E-9408472IPR001356Homeobox domain
CDDcd000862.80E-12408469No hitNo description
SuperFamilySSF466896.42E-17409475IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28411475IPR009057Homeodomain-like
PfamPF059203.0E-18425464IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MATYIHGSSE FQAAPAASDG MQTLYLMNPN YVPYSDTHQP ATATNMFFLN PAGNSLNPIS  60
LPHAPPSNHN HFVGLPLPSP TPTIGPSNSD EPNRPPPLFS GVHHNLWGSS IDKQNSSPGS  120
SSHPQLVSAV ATAGNSSGPL DVISQLGLRR SGVSPRQGLS LSLSSQQVPY RSSNVETVIQ  180
GQPEVPLPPT TSLAADDMRI SGSSPSTVSV VSNGISGVQS VVLGSKYLRA VQELLDEVVN  240
VGKGIKTDPS GGTKEKTKAA KKEPVAAVNG DGSSAAENGV EPGPELTTAQ RQELQMKKAK  300
LVNMLDEVEQ RYRQYHHQMQ TVVASFEQAA RLGAAKSYTA LALQTISKQF RCLKDAISCQ  360
TKATNKSLGE EDCLGVKMEG SRLRYVDNQI RQQRALQQLG MIQHHNAWRP QRGLPERAVC  420
VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYMEEIKE  480
QERNTNGSEE INANKNEQQM ETGSSSGGQT MDQVKAQSKP RAISQNNNNS ITSHADQFSN  540
STISTSPMGG SLVQQTSFNL IGSSDLDRGP KKPRNELQNS AFGILPMEME MKQGETREIN  600
MRFGDERLFK DHSYSYLSGT VYSSMREVGR FNHGQQLPPG FHGNSGVSLT LGLPDCENLS  660
LSGNHQNFVP NQTINDVEGA TQSDFCAINT QPQPSHSTTY DTMEMQSRKR FAAPLLPDFV  720
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16414472563Homeobox protein Meis2
3k2a_B5e-16414472563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5266895e-65HQ526689.1 Gossypium herbaceum clone NBRI_B_1357 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689225.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_016689226.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A1U8JG580.0A0A1U8JG58_GOSHI; BEL1-like homeodomain protein 1
STRINGGorai.009G082700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-115BEL1-like homeodomain 1