PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0688
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 427aa    MW: 47124.4 Da    PI: 8.5537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0688genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12356401655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Gh_D05G0688 356 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 401
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16353416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-13354405No hitNo description
Gene3DG3DSA:4.10.280.104.4E-16355421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-14356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9356401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MESDLQHHHH HNLFDYHQSQ HNQKQMNSGL TRYQSAPSSY FSNILDRDFC QEILNRPSSP  60
ETERIIAKFL SSSGDAAGGG DANTETIPSQ NLCTATQSSP VRETPVKIEQ SAQIMTPINN  120
QTGLMQQPKY SSASQNFYQS QPPQYLLNQQ PSASAMDYTT PNPTGMKMGG GNNSNLIRHS  180
SSPAGLFSKI NIENIAGYGV MRGMGDYGSV NSSNREATFR SASRPPTPSG LMTPIAEMGN  240
KSMGPFSSEN AGFGENRPNN YSSGLPVTSW DDSMMISDNM SGIKRLREDD RSLSGLDGAE  300
TKNADGGNHR PPPLLAHHLS LPKSSDMSAI EKFLQYQDSV PCKIRAKRGC ATHPRSIAER  360
VRRTKISERM RKLQDLVPNM DKQTNTADML DLAVDYIKDL QKQVKSLSDS RAKCSCAAQQ  420
QQQQRQQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689284.10.0PREDICTED: transcription factor bHLH122-like isoform X1
RefseqXP_016689285.10.0PREDICTED: transcription factor bHLH122-like isoform X1
TrEMBLA0A1U8JG820.0A0A1U8JG82_GOSHI; transcription factor bHLH122-like isoform X1
STRINGGorai.009G071900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-77bHLH family protein