PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D05G0600 | ||||||||
Common Name | WRKY24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 34215.5 Da PI: 8.7555 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.1 | 2.4e-30 | 155 | 213 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh Gh_D05G0600 155 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHA 213 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-29 | 148 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.649 | 149 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-25 | 151 | 214 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-35 | 154 | 214 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 156 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MESTWVDTTL DLNINSSHNT IQVLKRESSG KLADSDVKVP VKQETGALVE ELNRIIAENK 60 KLTEMLTVLC ERYSSLQNQY MELVSRNSGS DATAATSKKR KAECEDYVPM IGFSGKAESS 120 FSDEDSCKKP KDCIKAKISR AYVRTNPSDN SLIVRDGYQW RKYGQKVTRD NPSPRAYFKC 180 SFAPSCPVKK KVQRSAEDPS ILVATYEGEH NHAQHSTPAL SSLSPNSGTS NPRSAPVSSS 240 SSAPTKSSPP TVTLELMKPT GLGNDTKNPT QQVDEPAIQQ ILVQQMAASL TRDPTFTAAL 300 AAAISGKVLD HKW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 153 | 212 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 153 | 212 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.9192 | 0.0 | boll| ovule| root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF031078 | 0.0 | KF031078.1 Gossypium hirsutum WRKY transcription factor 24 (WRKY24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444987.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 isoform X1 | ||||
TrEMBL | A0A059Q8L0 | 0.0 | A0A059Q8L0_GOSHI; WRKY transcription factor 24 | ||||
STRING | Gorai.009G062300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 6e-81 | WRKY DNA-binding protein 40 |