PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G0534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 450aa MW: 47391.8 Da PI: 6.6256 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.2e-12 | 246 | 291 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Gh_D05G0534 246 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 291 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.19E-13 | 239 | 295 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-17 | 239 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 241 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 243 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-9 | 246 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MQPCSREMQA MDSLLSPTQP IPLQDLQPNG NSGTHQAQIH NPQFDPTSSH DDFLDQMLST 60 LPSCSWSDLK SPWDPPKSDE TPPSNPDNNA GFHYDEILAS KLRQHQINGG GGGTTAAMKM 120 MMQQQMLLPG RPIAAAGGGG LTMPLHNDIV DGSSFKSPNQ QGGEGSVQAL YNGFGAGPLH 180 GTNNQSPNQP QHFHHPQGGN MQTQSFGATA GTVMNQSQAS GSTTGGTPAQ PKQRVRARRG 240 QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS 300 RLGGAAAVAP LVADMPPEGG DCVQTTAGGG GSLQRNSNGN QPSANNDSLT VTEHQVAKLM 360 EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHSRNPMMN KGSSSNHPLL QSNGDGPSSP 420 SMSVLTVQSA TMGNGGLDGS AKDAASVSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 255 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1743 | 0.0 | boll| leaf| ovule| root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF836432 | 7e-88 | KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016689546.1 | 0.0 | PREDICTED: transcription factor bHLH66-like | ||||
TrEMBL | A0A1U8JH16 | 0.0 | A0A1U8JH16_GOSHI; transcription factor bHLH66-like | ||||
STRING | Gorai.009G055200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 5e-75 | LJRHL1-like 1 |