PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0489
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 264aa    MW: 28898.2 Da    PI: 6.0314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0489genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1968118155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Gh_D05G0489  68 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 118
                  68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1368118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-3269127IPR001471AP2/ERF domain
SMARTSM003801.4E-3769132IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2169127IPR016177DNA-binding domain
PROSITE profilePS5103223.40669126IPR001471AP2/ERF domain
CDDcd000182.27E-3270128No hitNo description
PRINTSPR003672.8E-107081IPR001471AP2/ERF domain
PRINTSPR003672.8E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTEQQNSETE CSSNSLSWPP RSPTSPGSTH SPHPNSLPGS TRTLNGKPET TCDTNRKMKR  60
MRDSSKHPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGNS  120
AILNFPELAN SLPRPVSLAP RDVQAAAAKA AQMGNLDSPS PSTTSSSSTS TLSSSSSLSS  180
LVSHLDLSSA SDELTEIVEL PSLGTSYESV ELGSEFIFAN SMDGWFYPPP WLESMEDCEY  240
VCNQLVVPES VLQNGFKQGL LWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1964130976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447312.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-73DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2Q9A20.0A0A0D2Q9A2_GOSRA; Uncharacterized protein
STRINGGorai.009G050200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-68ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]