PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G2016

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 416aa MW: 47316.8 Da PI: 6.1066

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G2016	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.7	2.4e-21	87	181	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt ++v++Li++ ++++e+ ++++ +k ++W+ vsk+m erg+ +sp+qC++k++nlnk y+++++ +++ +++++++ +++d Gh_D04G2016 87 KWTGKMVKLLITILSYIGEDPSTDCagnqikvssllRKLGKWKCVSKVMLERGYIVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENPKLLD 181 7********************988899999999999*****************************************95588887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-18	85	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEGKPSAGGN MLQEWEYDCL GLQGSIQPQN EQQPCMSRLP SAFGSVENER QEIIVIEDDV 60 TNYPNQCMLE HNEAGKNEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS 120 LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL 180 DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRLYLPH DPDLLQSLLF ILKNVDDYEL 240 LDSNQPVPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SGSNQTLNAE GDATEYNGAN 300 SGFSAEISTM WFKPMNNNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RRAYQLEKQK 360 LRLKSKVLDL EKQRLKWRCR SWKQDMELEK MRLVNKCLKH GNECIALQLK GKKIGS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEGKPSAGGN MLQEWEYDCL GLQGSIQPQN EQQPCMSRLP SAFGSVENER QEIIVIEDDV  60
TNYPNQCMLE HNEAGKNEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS  120
LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL  180
DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRLYLPH DPDLLQSLLF ILKNVDDYEL  240
LDSNQPVPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SGSNQTLNAE GDATEYNGAN  300
SGFSAEISTM WFKPMNNNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RRAYQLEKQK  360
LRLKSKVLDL EKQRLKWRCR SWKQDMELEK MRLVNKCLKH GNECIALQLK GKKIGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613025.1	0.0	PREDICTED: uncharacterized protein LOC108458224
TrEMBL	A0A1U8LB73	0.0	A0A1U8LB73_GOSHI; uncharacterized protein LOC107924621
STRING	Gorai.012G159500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22149	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	2e-75