PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1777
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 161aa    MW: 18302.5 Da    PI: 8.8275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1777genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-091359555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +Er RR++++  f +L +llP +    ++K+s  e++ +A+ Y+k+Lq
  Gh_D04G1777 13 RCLVERERRKHMKCLFTKLSSLLPIQ----QTKMSVPEMVDQATAYVKELQ 59
                 5679*********************8....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-13677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.131858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-81063No hitNo description
Gene3DG3DSA:4.10.280.107.8E-111081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-61459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-81464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDNGNGASMR ISRCLVERER RKHMKCLFTK LSSLLPIQQT KMSVPEMVDQ ATAYVKELQG  60
RLEQHKGTKV QLERTCEMRK RKRMIRPVLN VRDLGYNLEV NLITGLNVEF ALSDFINILQ  120
EEGADILSAT CHHAGDKAIY TILCQVQTMI SMILSVCGAL Y
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.225601e-136boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5815021e-56JX581502.1 Gossypium hirsutum clone NBRI_GE14150 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457988.11e-105PREDICTED: transcription factor bHLH125-like
RefseqXP_012457989.11e-105PREDICTED: transcription factor bHLH125-like
TrEMBLA0A0D2V6E71e-115A0A0D2V6E7_GOSRA; Uncharacterized protein
STRINGGorai.012G171500.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-20bHLH family protein