PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1566
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20708.8 Da    PI: 9.848
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1566genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-163078149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k i n+  r +tfskR+ gi KK +ELS+LC+++++ i+fs+ g+ + +
  Gh_D04G1566 30 KMIRNEVDRLITFSKRQSGINKKISELSILCGTKILFIVFSPAGNPFSF 78
                 6799**************************************9986665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.24E-232294IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.1892282IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-212281IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-162444IPR002100Transcription factor, MADS-box
PfamPF003193.3E-183278IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-164459IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-165980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSFGLLLGFD ILSVASVRKK TKGRQKIEIK MIRNEVDRLI TFSKRQSGIN KKISELSILC  60
GTKILFIVFS PAGNPFSFCF PSIESVANQF LNESVLVNGN TSTPIEANHM VRLNKLIQHY  120
NEVHNQMEAS KEKQKVLVMA QGTSGTDSTN HWWETPIDKH NSRELHELYS RFSELINLFH  180
TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-1322891683PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-1322891683PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483076.16e-64PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5Q9651e-112A0A2P5Q965_GOSBA; Uncharacterized protein
STRINGGorai.012G147800.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-29AGAMOUS-like 57