PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1389
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 235aa    MW: 27196.1 Da    PI: 7.6255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1389genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-102775454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +++E++RR+++++ ++ L +llP++  ++++ ls  +   +Av+YI +L
  Gh_D04G1389 27 ERKIIEKNRRNHMKNLYASLNSLLPHR--NSKEPLSLPDQIDEAVNYITKL 75
                 5789**********************6..26666**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.50E-42277No hitNo description
SuperFamilySSF474597.07E-112393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4462375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-102594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-72775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MELQMEYLAV DKQTEKKRAR CSSAKVERKI IEKNRRNHMK NLYASLNSLL PHRNSKEPLS  60
LPDQIDEAVN YITKLKTRMN ESREKKESLM SRKRSYTCAD TITSETTASL KSPEIKMSEN  120
GSAMEVVLTT GKDSQFMFYE MIYIIHQHGA QVLNASFSIL GNTVFHIVHA EIGAFVGAQI  180
IKDKLKRLVK GSSCEEELQQ ELWNYQIHPE TWDLNYEIYS ETWDFPIMLG STYMP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.36630.0boll| ovule| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738602890.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680030.11e-178PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1U8IPI01e-176A0A1U8IPI0_GOSHI; transcription factor bHLH118-like
STRINGGorai.012G127900.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-34bHLH family protein