PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1295 | ||||||||
Common Name | ROX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 171aa MW: 19075.6 Da PI: 8.6808 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.4e-09 | 56 | 96 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P +K++ +++L +A++Y+k L Gh_D04G1295 56 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAIHYVKFL 96 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 52 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.20E-13 | 53 | 100 | No hit | No description |
SMART | SM00353 | 2.2E-12 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-12 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-7 | 56 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDYFPSANFS SSFIDGSSSV TTTSNNSSSC SKEKKKAGKK GKGAVKLSTD PQSVAARERR 60 HRISDRFKIL QSMVPGGTKM DTVSMLDEAI HYVKFLKTQI WLHQAMINFV DDDSSSLFLP 120 TSFPVETNIY PSSNPNPNLE PMQPSQLLPL PDSCFQGPQQ TMPYDAYMRH Q |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP236113 | 0.0 | KP236113.1 Gossypium hirsutum ROX-like transcription factor (ROX) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458653.1 | 1e-126 | PREDICTED: transcription factor bHLH140-like | ||||
Refseq | XP_016739551.1 | 1e-126 | PREDICTED: transcription factor bHLH140-like | ||||
TrEMBL | A0A0D2VYF0 | 1e-124 | A0A0D2VYF0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0E3Z8Z0 | 1e-124 | A0A0E3Z8Z0_GOSHI; ROX-like transcription factor | ||||
STRING | Gorai.012G117300.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15290 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 4e-33 | APRATAXIN-like |