PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1122 | ||||||||
Common Name | WRKY97 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 466aa MW: 51431.2 Da PI: 9.3078 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.2 | 3.4e-33 | 194 | 250 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k Gh_D04G1122 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHPK 250 9***************************************.***************85 PP | |||||||
2 | WRKY | 104.7 | 4.9e-33 | 384 | 441 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++prsYYrCt +C+v+k+ver+++dp+++++tYeg+Hnhe Gh_D04G1122 384 GDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERASDDPRAFITTYEGKHNHE 441 6********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-30 | 184 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-26 | 190 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-37 | 192 | 250 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.076 | 194 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-26 | 194 | 249 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-34 | 368 | 443 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-28 | 376 | 443 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.819 | 378 | 443 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-38 | 383 | 442 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-26 | 385 | 441 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MEVKEAERIV IAKPVASRPT CSSFKSFSEL LAGAINASPP NACSANIVPA IRPKTVRFKP 60 VVNRAPSAMV SSQAEQSRIG ISISSDKVSK SDVKPTVVYK PQAKLVSKTT VSLLANMGNF 120 SASNQQRLQS MEAPVEYANW EKMRAQVRPN HHQNAPSQAE TDQTSEPSKV GSQNMEEDPK 180 VLPAVANSDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI 240 VYKGEHNHPK PQPPKRNSSQ GLGVTSDGTG QDANNSLWSN NHNERNEGSE TRAENHSEVR 300 LSVLPAYQVK ALAPYEHVTT GGASENSTGL SGECEEASKE GADVESKSKR RKNENQSSEV 360 GTLGECIQEP RVVVQSCTDS EIMGDGFRWR KYGQKVVKGN PYPRSYYRCT NVKCNVRKHV 420 ERASDDPRAF ITTYEGKHNH EMPLRNTNHV TAASDPDSNS PAIKDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-31 | 194 | 443 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-31 | 194 | 443 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21136 | 0.0 | boll| ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 84647320 | 0.0 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669852 | 0.0 | KF669852.1 Gossypium hirsutum WRKY transcription factor 97 (WRKY97) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313801.1 | 0.0 | WRKY transcription factor 44-like | ||||
Refseq | XP_016680409.1 | 0.0 | PREDICTED: WRKY transcription factor 44-like | ||||
Refseq | XP_016680411.1 | 0.0 | PREDICTED: WRKY transcription factor 44-like | ||||
TrEMBL | A0A068LCP3 | 0.0 | A0A068LCP3_GOSHI; WRKY transcription factor 44-like | ||||
STRING | Gorai.009G421200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8362 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 1e-114 | WRKY family protein |
Publications ? help Back to Top | |||
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