PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 257aa MW: 28510.8 Da PI: 6.3818 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.9 | 5e-09 | 103 | 145 | 8 | 50 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 rr NReA r++R++Kka ++ Lee+vk+L N++L +l+ Gh_D04G0691 103 RRSLGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVRKLQ 145 78889*********************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.5E-6 | 99 | 163 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-10 | 101 | 162 | No hit | No description |
SuperFamily | SSF57959 | 1.63E-7 | 102 | 146 | No hit | No description |
Pfam | PF07716 | 2.9E-12 | 103 | 145 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 1.25E-11 | 108 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLYSYCLSGQ ENMEDGEIEL SDHVLLSNTV PSTNFQDSTS VDLIIDEYLK NTRTCSHTHT 60 CNPPGPDVAH SHTCYHTHTQ LLTSEDDDYH NNKASSGLNL KPRRSLGNRE AVRKYREKKK 120 AHTAYLEEEV KKLRLLNQQL VRKLQGQTIL EAEVLRLRSL LVGIRAKVDS ELGVFPFHKQ 180 CANATILKEG DCGVQSIGDT ISLQCQTDLP CFHPHPGSLS SHASIGGSEK VSISLEGNCQ 240 PATVNCQANE HNSDDQC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19302 | 1e-100 | ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016738788.1 | 0.0 | PREDICTED: basic leucine zipper 24-like isoform X1 | ||||
Swissprot | Q8GTS2 | 4e-49 | BZP23_ARATH; Basic leucine zipper 23 | ||||
Swissprot | Q8VY76 | 6e-49 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | A0A1U8NL59 | 0.0 | A0A1U8NL59_GOSHI; basic leucine zipper 24-like isoform X1 | ||||
STRING | Gorai.012G081200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2036 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-51 | bZIP family protein |
Publications ? help Back to Top | |||
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