PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0689

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 388aa MW: 43281.5 Da PI: 5.8966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0689	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	217	252	2	32
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC....... CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas.....k 32 ++h + Er RR ++N++f+ Lr+++P+++ + Gh_D04G0689 217 TTKHFATERERRVHLNDKFQALRTMVPSPTkwwrkR 252 579*************************86566550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.58E-7	212	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.79E-5	216	247	No hit	No description
Pfam	PF00010	5.3E-7	218	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-7	218	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MNLQESGCFD PQYSMTHWHA LMVMGGLPSP DGTTTQTHDI LEDNLNLSSY NHHQLEEEDA 60 STAAQMEIQQ HHLLDTTTTN SHFIRPELSY EQSNWDAADH QSFNMLLSSS SPEAAYPPTP 120 DLLNLFHLPP KCAFLPNSPI SFKSASASSV VCDPLFHLNL TPQPPVFREL LQSLPHGYTL 180 PADEKELYHD GDNGILEFTR DISMAAHAKG RDKAGKTTKH FATERERRVH LNDKFQALRT 240 MVPSPTKWWR KRGEETASAA DAGDGGCKLL GLGDPDQCYN TCLRSSWLQR KSKNSEVDVR 300 LIDDEVTIKL VQRKKINCLL FVSRLLDELQ LDLHHVAGGN IGDYYSFLFN TKIYEGSSVY 360 ASAIANKLIN VVDKQDAAAA PPTSSTCL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MNLQESGCFD PQYSMTHWHA LMVMGGLPSP DGTTTQTHDI LEDNLNLSSY NHHQLEEEDA  60
STAAQMEIQQ HHLLDTTTTN SHFIRPELSY EQSNWDAADH QSFNMLLSSS SPEAAYPPTP  120
DLLNLFHLPP KCAFLPNSPI SFKSASASSV VCDPLFHLNL TPQPPVFREL LQSLPHGYTL  180
PADEKELYHD GDNGILEFTR DISMAAHAKG RDKAGKTTKH FATERERRVH LNDKFQALRT  240
MVPSPTKWWR KRGEETASAA DAGDGGCKLL GLGDPDQCYN TCLRSSWLQR KSKNSEVDVR  300
LIDDEVTIKL VQRKKINCLL FVSRLLDELQ LDLHHVAGGN IGDYYSFLFN TKIYEGSSVY  360
ASAIANKLIN VVDKQDAAAA PPTSSTCL

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460865.1	0.0	PREDICTED: transcription factor bHLH91-like
Swissprot	Q84TK1	6e-56	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A0D2V314	0.0	A0A0D2V314_GOSRA; Uncharacterized protein
STRING	Gorai.012G081100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]