PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0323

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 315aa MW: 35148.6 Da PI: 7.3084

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0323	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.1	4.2e-34	179	236	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers edp+vv++tYeg+Hnh+ Gh_D04G0323 179 EDGYRWRKYGQKAVKNSPYPRSYYRCTSPKCGVKKRVERSFEDPSVVITTYEGKHNHP 236 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-35	163	238	IPR003657	WRKY domain
SuperFamily	SSF118290	6.28E-30	171	238	IPR003657	WRKY domain
PROSITE profile	PS50811	32.742	173	238	IPR003657	WRKY domain
SMART	SM00774	4.0E-40	178	237	IPR003657	WRKY domain
Pfam	PF03106	7.2E-27	179	236	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSSNEKNDPQ HNYDPFQGFN RSTTFPFFDD NSPCIYNQSA AAPPPAFDPS YMTFTDCLNG 60 SNVIDYNSFS RAFDMSCSSS DVVSPMDDNT ATDNSKKIPT CADNNNNISE NPSTPNSSVS 120 SSSNEDEDSS KAKKDKQPKG CEDHGDDKSK KVNKATKKEK RQKEPRFAFL TKSEIDHLED 180 GYRWRKYGQK AVKNSPYPRS YYRCTSPKCG VKKRVERSFE DPSVVITTYE GKHNHPIPAT 240 LRGHAAGMFS PPIMSGSMGP TFPHEFLTHF LPSSSNNPAA HANSMHHQTQ QQQLQVPDYG 300 LLQDLVSSFT RSQAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-32	171	239	10	78	Probable WRKY transcription factor 4
2lex_A	4e-32	171	239	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438456	0.0	KM438456.1 Gossypium aridum WRKY17 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016751350.1	0.0	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1U8PJI6	0.0	A0A1U8PJI6_GOSHI; probable WRKY transcription factor 71
STRING	Gorai.012G040700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	2e-56	WRKY DNA-binding protein 28