PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1427 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 632aa MW: 71070.1 Da PI: 6.3815 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7e-09 | 370 | 407 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Gh_D03G1427 370 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 407 554459******************************88 PP | |||||||
2 | BELL | 111.8 | 3.8e-36 | 232 | 302 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++elqk+k+kLls+lee+d+rYk+y++q+++v+ sFeavag+g+a +Y +lA+ka+SrhFr+L+d i++qi Gh_D03G1427 232 FMELQKRKTKLLSMLEELDRRYKHYCDQMKAVVLSFEAVAGIGAASVYSALASKAMSRHFRSLRDGIVGQI 302 689******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.9E-60 | 167 | 300 | IPR006563 | POX domain |
Pfam | PF07526 | 3.2E-46 | 173 | 298 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 348 | 411 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-11 | 351 | 412 | No hit | No description |
SMART | SM00389 | 5.8E-9 | 351 | 415 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 352 | 417 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 354 | 417 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.4E-18 | 368 | 407 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MDDKSTGFCY STMPTHLVNQ IQSFESNPEM FNLTTGMEMI GFFNKNGSNT TTTGTPSCSK 60 AVNESTTEFY QHAEFTTGLE VGTESSGPWQ DDSSFRCVFP CEGNERPSQG LSLSLSSSNP 120 TTIGVQSFEL KQVGHGYDNQ HDDMRFIGSS SSSREGFFAK PANHHHHQGE FQLRNSKYLG 180 PTQELLNEFC SLAMKQMDAS KQKQSIHKGN KQWDDENGGS SSMKQPLHSL DFMELQKRKT 240 KLLSMLEELD RRYKHYCDQM KAVVLSFEAV AGIGAASVYS ALASKAMSRH FRSLRDGIVG 300 QIQATRKAMG EKDPVAPGTT KGETPRLRIL DQALRQQRSY HQMNMMESHP WRPQRGLPER 360 SVSVLRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYLEE 420 TKEHENNNMA SPNGATNTNQ NDQKPTPDQL VRVDSECLSS IVTNLDKNDP KSAKTIETHH 480 SLHHHHHHHQ QQSFATYGAM ELDFSSYNHH QAAASNGGGV SLTLGLQQHG GNNGVSLAFS 540 PTSQSSLFYP RSDQIEDCQP VQYSLLDGEG QHLPYRSLMG AQLLHDLAEY GVGVTESFIE 600 EKVQVELIVN SEEIHKDEID YDLCLVEKFL GE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 357 | 415 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 357 | 415 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 1e-15 | 357 | 415 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 357 | 415 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-15 | 357 | 414 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 357 | 414 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527213 | 1e-145 | HQ527213.1 Gossypium herbaceum clone NBRI_C_3534 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016713670.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-153 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1U8LGJ0 | 0.0 | A0A1U8LGJ0_GOSHI; homeobox protein BEL1 homolog | ||||
STRING | Gorai.003G156000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-153 | TALE family protein |
Publications ? help Back to Top | |||
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