PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1371 | ||||||||
Common Name | WRKY18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 573aa MW: 62754.5 Da PI: 7.2695 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.7 | 2.5e-33 | 234 | 291 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Gh_D03G1371 234 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 291 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.8 | 1.1e-33 | 406 | 464 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d k+v++tYeg+Hnh+ Gh_D03G1371 406 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLKAVITTYEGKHNHD 464 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-28 | 223 | 292 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-25 | 232 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 233 | 291 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.824 | 234 | 292 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 234 | 290 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.3E-38 | 391 | 466 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-29 | 398 | 466 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.17 | 401 | 466 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-39 | 406 | 465 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-26 | 407 | 464 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MTSSYDTSAN SLPQNAFGFS THPFMTTSFS DLLASGTTDD DNSSSAVNHG KRGGGLSLSD 60 RIAERTGSGV PKFKSLPPPS LPISTPPVSP SSYFAIPPGL SPAELLDSPV LLNASNILPS 120 PTTGTFPAQA FNWKPSSGNN QQNVKRVDKS YTDFSFQTFQ SSTNTNQTAQ QEAWSFKESV 180 KEDDFSSGKN MVKSEYNQMQ SFSPEIANIQ SCQSDYTNYQ HQQSQSLRGN RKSDDGYNWR 240 KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV ERSLDGQITE IVYKGSHNHP KPQSTRRSSS 300 SSSSSIAIQA SSAATSEIPD HSFISHGSGH MDSAATPENS SISVGDDDFD RGSQKSKSGG 360 DEFDEDEPDA KRWRGEGETE GISAPGSRTV REPRVVVQTT SDIDILDDGY RWRKYGQKVV 420 KGNPNPRSYY KCTHPGCPVR KHVERASHDL KAVITTYEGK HNHDVPAARG SGGHSVNRPL 480 PDNNNNNGAM AIRPSPLNNP MSNNQALRGL RQSTTEGESP FMLEMFQGNG NLGFSGFGNS 540 GGSIMNQQHD VHNMFSRTKE EPRDEAFIES LLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-37 | 234 | 467 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-37 | 234 | 467 | 8 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9466 | 0.0 | boll| embryo| ovule| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669858 | 0.0 | KF669858.1 Gossypium hirsutum WRKY transcription factor 18 (WRKY18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314201.1 | 0.0 | probable WRKY transcription factor 25 | ||||
Refseq | XP_012471694.1 | 0.0 | PREDICTED: probable WRKY transcription factor 25 | ||||
Swissprot | Q6B6R4 | 1e-141 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A1U8LGD9 | 0.0 | A0A1U8LGD9_GOSHI; probable WRKY transcription factor 25 | ||||
STRING | Gorai.003G150700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4583 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-111 | WRKY DNA-binding protein 33 |
Publications ? help Back to Top | |||
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