PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D03G1191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 717aa MW: 79776.1 Da PI: 9.9121 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 597 | 646 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Gh_D03G1191 597 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.83E-6 | 400 | 490 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.733 | 592 | 651 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 596 | 649 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 597 | 647 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.15E-17 | 598 | 648 | No hit | No description |
SuperFamily | SSF46689 | 1.35E-15 | 598 | 679 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 717 aa Download sequence Send to blast |
MELQKRLDYG FNGYQVPATP RATRSARKRV PFKKRVEDKR ISAFDLLATV AGKLLLDKES 60 TPVSSNTSSA EDQSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS 120 CSFRKSPSLK NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCRA 180 SGGRIKLEFE NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS 240 YGFNNHLGSF PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY 300 LKVAPRLNDV TLSNSDENLK SAYCDSSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS 360 EGISNSPEQS INGNASGIYP KMRGVTGESP SLADQRISFH SRDSHVKFRI KSFRVPELFI 420 EIPESATIGS LKRTVMEAVT AILGGGLRIG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG 480 FSLEPNPSQT FPSHCPGGSP LKFPCDTPLP LARYPATPGL VTRVTHDPSH EPHMHNLGNF 540 VESDHDSAPS PTDMSLDKST TDSKALVAVP AMSVEALDVV PAHRKSKRSE VVQRRIRRPF 600 SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE 660 PVPQELLDRV LTAHAYWSQQ QAKQQLKQQQ QPESCLLLYN STVRASSRSD GGEKNFG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-57 | 581 | 687 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.14822 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740420.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_016740421.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Swissprot | Q6R0E3 | 1e-144 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | A0A1U8NN55 | 0.0 | A0A1U8NN55_GOSHI; telomere repeat-binding protein 5-like | ||||
STRING | Gorai.003G130700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3240 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-118 | TRF-like 2 |