PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 32227.7 Da PI: 6.4104 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 4e-14 | 12 | 57 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +g+WT eEde+l ++vk++G++ W++I r mg + Rt+k+c++rw + Gh_D03G1006 12 KGPWTGEEDEILMNYVKKYGPKGWSSI-RSMGlLPRTGKSCRLRWVN 57 79************************9.6777788**********87 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 68 | 107 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +++G++ W++Iar+++ gRt++++k++w Gh_D03G1006 68 KFSAEEERVVIELQAEFGNK-WAKIARHLP-GRTDNDVKNFW 107 79******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.312 | 7 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 8 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.34E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-12 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-12 | 12 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-11 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 21.288 | 60 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 61 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 65 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-11 | 68 | 107 | No hit | No description |
Pfam | PF00249 | 1.2E-12 | 68 | 107 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MERQSDGTFI KKGPWTGEED EILMNYVKKY GPKGWSSIRS MGLLPRTGKS CRLRWVNKLR 60 PNLKTGCKFS AEEERVVIEL QAEFGNKWAK IARHLPGRTD NDVKNFWSAR RKRLERISHT 120 PKSKGKDHHA LHEMPMVEVV PSNGVPLEQG SSSHQHPFFP GNLEEFKLVP LPDLIKPDFL 180 NMETGLSTLD IEPIRMIPQL QVDLPILPDS FDFNFAAMFN NQEASESESK PISLTKIPSA 240 GIKGSDAELG KKENIGNSAT PDSFFDEFPT DMFDCLEPLV SSSEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-27 | 10 | 113 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470997.1 | 0.0 | PREDICTED: transcription factor MYB23-like | ||||
Refseq | XP_016740141.1 | 0.0 | PREDICTED: transcription factor MYB23-like | ||||
TrEMBL | A0A0D2RKK9 | 0.0 | A0A0D2RKK9_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NM93 | 0.0 | A0A1U8NM93_GOSHI; transcription factor MYB23-like | ||||
STRING | Gorai.003G112700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22291 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 3e-64 | MYB family protein |