PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0922
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26895.5 Da    PI: 9.188
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0922genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.4e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+++fss+gkl+ey++
  Gh_D03G0922  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAQVALMVFSSKGKLFEYAT 59
                 79***********************************************86 PP
2K-box97.52e-32811747100
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     e +++ +++ e+akLk+++e+Lqr++Rh+ Ged+++Lsl+eLq+LeqqL+++lk+iRs+Kn+l+le+i+elqkk k+lqe+n+ L kk +e
  Gh_D03G0922  81 ATDEIQQNGNWTWEHAKLKARMETLQRNLRHYEGEDIQNLSLRELQNLEQQLDSALKRIRSRKNQLMLESISELQKKDKALQEQNNILAKKEKE 174
                  556678899*********************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.226161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-33291IPR002100Transcription factor, MADS-box
CDDcd002654.22E-40275No hitNo description
PRINTSPR004044.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-2683171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.50788184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AQVALMVFSS KGKLFEYATE  60
SCMERILERY ERNSYTEIQC ATDEIQQNGN WTWEHAKLKA RMETLQRNLR HYEGEDIQNL  120
SLRELQNLEQ QLDSALKRIR SRKNQLMLES ISELQKKDKA LQEQNNILAK KEKEKTNVEQ  180
AHWQLNNNCQ DSSSMLLPLN ISSNGREKED NETTNSGVLL PWMIRHHLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21170169MEF2C
5f28_B6e-21170169MEF2C
5f28_C6e-21170169MEF2C
5f28_D6e-21170169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556380.0KC155638.1 Gossypium hirsutum MADS box protein MADS43 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740011.11e-167PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ6E6S71e-98AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1U8NLX01e-166A0A1U8NLX0_GOSHI; truncated transcription factor CAULIFLOWER A-like isoform X2
STRINGGorai.003G103000.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-93AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]