PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0606 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YA | ||||||||
Protein Properties | Length: 329aa MW: 36450.3 Da PI: 9.0281 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.4 | 1e-32 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF Gh_D03G0606 172 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGCGGRF 228 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-37 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.337 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.0E-27 | 173 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.6E-24 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 176 | 196 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.6E-24 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MQLKPYVTNQ PEPNANNNKP YTIGSQPWWS NTRQDSMVTD VLGRNITSLS LVEHPSECLG 60 AKISESLSDG THKICSTKEL PFTILSHPDG KCIVEQPQLQ HAIPIIPPSM GEYVAAPTQM 120 ELVGHSIACP SYPYADPYHR GPMSPYGPQS LVHSHCLGVN SARMALPLEM AEEPVYVNAK 180 QYHGILRRRQ SRAKAELEKK LIKVRKPYLH ESRHLHAMRR ARGCGGRFLN TKKLGTDASN 240 AVPNRGSDSA SSNLSSVGHG ESKESQLQGT NNQQQALSNA NGCYPHHERF LFSTSGSLSD 300 KMMEGDCPRQ QQRERIMANQ VPHMAPTIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-20 | 172 | 232 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24323 | 1e-89 | ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622462.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A2P5X3R4 | 0.0 | A0A2P5X3R4_GOSBA; Uncharacterized protein | ||||
STRING | EOY09312 | 1e-156 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15602 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 2e-47 | nuclear factor Y, subunit A1 |