PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0587

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 720aa MW: 78044.5 Da PI: 6.7017

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0587	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Gh_D03G0587 302 PCPDFHK-GACRRGDICEYAHG 322 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12796	1.0E-9	83	156	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.7E-17	86	166	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.66E-14	86	165	No hit	No description
SuperFamily	SSF48403	7.93E-16	86	164	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.714	87	163	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.012	87	117	IPR002110	Ankyrin repeat
SMART	SM00248	0.0016	122	154	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.369	122	157	IPR002110	Ankyrin repeat
SMART	SM00356	8.9E-4	297	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	302	322	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.389	302	324	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	330	361	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	36	332	355	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MCCGSEPINH SSNPTRSNNS FGDNRHPSVE MNRLTVETED IFATLLELAA NNDAEGFKRT 60 IEHDPSVVDE VGLWYGRRKG SKQMVHEERT PLMIAATYGS IGVIKLILSS SDADVNRVCG 120 HEKSTALHCA ASGGTVNAVD VVKLLLAAGA DANMVDANGH RPVDVIGFPL KLQAVKLTLQ 180 ELLGTESSVI EQNLRVSTAV ANSGSLSPSR DNGSPSCSNS LPKLKSTAAP ISTSEKKEYP 240 IDPSLPDIKN SIYSTDEFRM YSFKVQPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFHKGA CRRGDICEYA HGVFECWLHP AQYRTRLCKD GINCARRVCF FAHTAEELRP 360 LHVSTGSAVL SPRSSTSAAT AMDFAAALSL LPGSPSSVSV MSPSPFTPPI SPSAKGMPHS 420 NVAWPQPNVP ALHLPGSNLQ LSRLQSSLNA RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ 480 PSMSSNSMNR SGRLKTLTPS NLEDLFSTES SSPQYSDQAL AAVVFSPSHK SAVLNQFQQQ 540 SSMLSPINTS FSPKSNEYPL LQASLSGRMS PRNVEPISPM SSRVSMLAQL EKQQFRSLSS 600 RELGSSSPAI IGSPVNSWSK WGSSNGKPDW AVNADELGKH HASFELSNGD EPDLSWVQSL 660 VKESPTEMKE KMKASVSGVP SNASKSEGSN TNSQVDPLDH AVLGAWLEQM QLDQLVALQN

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MCCGSEPINH SSNPTRSNNS FGDNRHPSVE MNRLTVETED IFATLLELAA NNDAEGFKRT  60
IEHDPSVVDE VGLWYGRRKG SKQMVHEERT PLMIAATYGS IGVIKLILSS SDADVNRVCG  120
HEKSTALHCA ASGGTVNAVD VVKLLLAAGA DANMVDANGH RPVDVIGFPL KLQAVKLTLQ  180
ELLGTESSVI EQNLRVSTAV ANSGSLSPSR DNGSPSCSNS LPKLKSTAAP ISTSEKKEYP  240
IDPSLPDIKN SIYSTDEFRM YSFKVQPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFHKGA CRRGDICEYA HGVFECWLHP AQYRTRLCKD GINCARRVCF FAHTAEELRP  360
LHVSTGSAVL SPRSSTSAAT AMDFAAALSL LPGSPSSVSV MSPSPFTPPI SPSAKGMPHS  420
NVAWPQPNVP ALHLPGSNLQ LSRLQSSLNA RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ  480
PSMSSNSMNR SGRLKTLTPS NLEDLFSTES SSPQYSDQAL AAVVFSPSHK SAVLNQFQQQ  540
SSMLSPINTS FSPKSNEYPL LQASLSGRMS PRNVEPISPM SSRVSMLAQL EKQQFRSLSS  600
RELGSSSPAI IGSPVNSWSK WGSSNGKPDW AVNADELGKH HASFELSNGD EPDLSWVQSL  660
VKESPTEMKE KMKASVSGVP SNASKSEGSN TNSQVDPLDH AVLGAWLEQM QLDQLVALQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	GRRKGSKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739718.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016739719.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U8NNT2	0.0	A0A1U8NNT2_GOSHI; zinc finger CCCH domain-containing protein 30-like
STRING	Gorai.003G093600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]