PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0497

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 331aa MW: 37489.3 Da PI: 7.0065

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0497	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60	5.1e-19	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl Gh_D03G0497 17 KGPWTPEEDRILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 64 79********************************************97 PP
2	Myb_DNA-binding	56.3	7.6e-18	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE+ ++++++ lG++ W++Ia +++ gRt++++k++w+++l Gh_D03G0497 70 RGRFSEEEEHTIINLHASLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 115 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-25	11	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.657	12	64	IPR017930	Myb domain
SuperFamily	SSF46689	2.4E-31	14	111	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-15	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-17	17	64	IPR001005	SANT/Myb domain
CDD	cd00167	3.19E-12	19	64	No hit	No description
PROSITE profile	PS51294	26.848	65	119	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-27	68	119	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-15	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	70	115	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-11	72	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MMGRPPPCSR DKNGLKKGPW TPEEDRILVD YIQRHGHGSW RALPKLAGLN RCGKSCRLRW 60 TNYLRPDIKR GRFSEEEEHT IINLHASLGN KWSAIATHLP GRTDNEIKNF WNTHLRKKLL 120 QMGIDPVTHR PRTDLNILPN LPQLLAAANF TNLMMTNIPL DAAHLAKLQL LHNIIQVLGT 180 TPTMEALNFL AGPTFGENHQ FSNLSLGFAP QELTQLQSNL LNLEAPQQHQ PEVTEYHNQP 240 MKDSNNHQFP SLSPANIPPP LTQSQLPELV PASPERRPQT ENKNINPINI SNPSSTSTTF 300 EGWGDLMDDE ESDSYWRDII DQASSQPWPF S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-28	15	119	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016741312.1	0.0	PREDICTED: transcription factor MYB39-like
Swissprot	Q9S9Z2	2e-85	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1U8NQP9	0.0	A0A1U8NQP9_GOSHI; transcription factor MYB39-like
STRING	Gorai.003G054100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-98	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]