PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 376aa MW: 40925 Da PI: 6.046 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.7 | 4.4e-21 | 157 | 206 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae+Aa+a+++a+++++g Gh_D03G0450 157 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 206 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-33 | 157 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-37 | 157 | 220 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 157 | 206 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.515 | 157 | 214 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-23 | 157 | 215 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-12 | 158 | 169 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.67E-29 | 165 | 216 | No hit | No description |
PRINTS | PR00367 | 5.6E-12 | 180 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MYQLMMTRED GSSSAAVAEA VPSSSLMLSD VCRDREMSVM VSALTHVVAG DVPADDEELS 60 GNEYLDWRSN NINPSLGFCG IKRGREEVDG CATGSGGVGR MAVESVANLC SQFVHLPHGG 120 SSSAVAGVTE ANTPAQLVPT YEYNSNENNN REEPRRRYRG VRQRPWGKWA AEIRDPFKAA 180 RVWLGTFDTA EDAARAYDEA ALRFRGNKAK LNFPENVKLR SVPPNQTATH FPISDSPNTH 240 FSIPTSTEPI VHHSQSHYSV PNPQVAGGYL DYSQLFLGSS TSSFPREQQL QQLRQNQPIY 300 PYDRTVLSSS VSSRAQSSSL SSSSPASPPT SYPMVFPLQA SGYQFNLGNS SEGGGIGDFS 360 VHSWSSDSSQ YTSTTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 156 | 217 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15809 | 0.0 | ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP259809 | 0.0 | KP259809.1 Gossypium barbadense ethylene-responsive element binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740962.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A1U8NPP0 | 0.0 | A0A1U8NPP0_GOSHI; ethylene-responsive transcription factor ABR1-like | ||||
STRING | Gorai.003G048800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 1e-26 | ERF family protein |