PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0388
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 270aa    MW: 30130.7 Da    PI: 7.7123
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0388genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.18.7e-3382136358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e
  Gh_D03G0388  82 KPRYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKESE 136
                  779*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2384136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.4E-3084135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-3084134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57685134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-32194269IPR009057Homeodomain-like
SuperFamilySSF466891.08E-19195268IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-26207263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSSMQTVANN GQTPNPIPAI ITVATLLFAP TGGEMEFEDQ EEQEEEMGLT PSYDSLGNSS  60
RLKMSGVEPG SVTPMGQQQQ RKPRYRECLK NHAVGIGGHA LDGCGEFMPA GTEGTLDALK  120
CAACNCHRNF HRKESELGSP NSIHTTDLYF HHHHHHQPPQ FAPYFRAPTG YLHVAGQQRP  180
LALPSTSGGG GHSREDQEDA SNQGSSRKRF RTKFTQEQKE KMLSLAERLG WRIQKHDEEI  240
VQQFCNETGV KRHVLKVWMH NNKHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-272082651875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.21240.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740746.11e-179PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
SwissprotA2Z2597e-80ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH56e-80ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0D2MJ390.0A0A0D2MJ39_GOSRA; Uncharacterized protein
STRINGGorai.003G042700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-73homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]