PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0317
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 337aa    MW: 38289.2 Da    PI: 4.8999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0317genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12170213654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Gh_D03G0317 170 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 213
                  589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-15167233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9170213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.21E-5171217No hitNo description
CDDcd048730.007263304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELSQHGFLE ELMAAAPRRD SWTTFSNGVT EFFPNGWNFE SFDATPPNLA FLGFSTTTTD  60
EIENPSFECP FSDQPYPFGD GFSVSEMDAS TSPFPPAHED YPSMVDDEDQ LGLLTTDHHH  120
QQQHSLEETK HSCKVEMEQT INNIQGFNMG LFVEKKTKAK RLEGQPSKNL MAERRRRKRL  180
NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLEKVNKL KEDKTKLGSN HLSLMNNMKE  240
LKPNEMLVRN SPKFDVERRE TDTRIDIQCA TKPGLLLSTV NTLEALGLEI QECVISCFND  300
FSMQASCSEV AEQRTLMSTE DIKQALFRNA GYGGTCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.143380.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469730.10.0PREDICTED: transcription factor bHLH93 isoform X1
RefseqXP_016740832.10.0PREDICTED: transcription factor bHLH93-like isoform X1
SwissprotQ9LSL16e-89BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D2MIX30.0A0A0D2MIX3_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NPB30.0A0A1U8NPB3_GOSHI; transcription factor bHLH93-like isoform X1
STRINGGorai.003G035900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.13e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]