PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0226

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 316aa MW: 35030.8 Da PI: 10.0179

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0226	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.3e-31	247	304	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYeg+Hnh+ Gh_D03G0226 247 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDASMLIVTYEGDHNHS 304 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.5E-13	196	243	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.8E-33	233	304	IPR003657	WRKY domain
PROSITE profile	PS50811	30.446	240	306	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	242	304	IPR003657	WRKY domain
SMART	SM00774	3.3E-37	245	305	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	247	303	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVLFADMAME LMLSYRNNNN GFSSKMEETA VQEAASGLES VEKLIKLLSQ TQQNYTSNNQ 60 EKKFQSSPTI SSMDLEMDCK VTAHAAVSKF KKVISLLGRT RTGHARFRRA PLPPPPTATV 120 TEHETKVYQP TPIQQIPLPV TTYLERKDSP TTTINFSYSS TTTTTDNNSN KQPSSSAFQI 180 SNLSSAGKPP LSSSLKRKCS IENLGSGIKC NSSSCRCHCS TKKRKQRTKR VVRVPAISLK 240 MADIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERALDDA SMLIVTYEGD 300 HNHSLSVAET TILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	233	305	2	73	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3815	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438455	0.0	KM438455.1 Gossypium aridum WRKY9 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016720058.1	0.0	PREDICTED: probable WRKY transcription factor 15
Swissprot	O22176	6e-90	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A1U8M327	0.0	A0A1U8M327_GOSHI; probable WRKY transcription factor 15
STRING	Gorai.003G026600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1715	28	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	4e-67	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]