PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 35294.2 Da PI: 8.7425 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.2e-09 | 40 | 92 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l + ++ +K++Ka+iL A++ + +L Gh_D03G0086 40 RKVQKADREKLRRDRLNEQFLELGNTLGNvY--PDRPKNDKATILVGAIQTLEDL 92 5677889**********************87..58888***********988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.9 | 39 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-11 | 40 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-7 | 40 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.29E-5 | 40 | 97 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-12 | 40 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-5 | 45 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF06005 | 1.6E-7 | 85 | 134 | IPR009252 | Cell division protein ZapB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000917 | Biological Process | barrier septum assembly | ||||
GO:0043093 | Biological Process | FtsZ-dependent cytokinesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MNHQRKPNDF SEAIAADLGT SNPEPRQRLE MEAEDPIAAR KVQKADREKL RRDRLNEQFL 60 ELGNTLGNVY PDRPKNDKAT ILVGAIQTLE DLTAEVKRLK AERSSLTEES RELTQENNEL 120 REEKASVKAN IENLTVQYQQ SRMMMFPWTG IDSSSVMAPP YPYPVPLPVT TGPIVMHPSL 180 QPYPFFGNHN PGAINNPCST FMPYSTMTSN PLIEQPSSQY TSSSHTSSKR DSKSKLADHQ 240 RGSNRESNGS NNVRMKLELK NPGSSTNEDL SARKKKGREE KKDRTNGCSL NCYSSSQDLK 300 DSSSNSVNDV SKSNK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX620719 | 1e-33 | JX620719.1 Gossypium hirsutum clone NBRI_GE67032 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692457.1 | 0.0 | PREDICTED: transcription factor bHLH121-like isoform X1 | ||||
TrEMBL | A0A1U8JQA3 | 0.0 | A0A1U8JQA3_GOSHI; transcription factor bHLH121-like isoform X1 | ||||
STRING | Gorai.003G009400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2353 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 5e-48 | bHLH family protein |