PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G2226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 345aa MW: 38153.6 Da PI: 6.5283 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.5e-09 | 60 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L Gh_D02G2226 60 LQKADREKSRRDRLNEHFLELGNALDPD----RPKNDKATILTDTIQLLKDL 107 56778********************997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.16 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-12 | 58 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-11 | 58 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.27E-8 | 58 | 111 | No hit | No description |
Pfam | PF00010 | 2.5E-7 | 60 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-7 | 63 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MDQLRKDAAF LPSIPSSNPS IIEFRQPPVD PLVPSTTRTQ SKSGQRDGEE PKDCVAARKL 60 QKADREKSRR DRLNEHFLEL GNALDPDRPK NDKATILTDT IQLLKDLTSQ VTKLKGEHAM 120 LTEESREQLT VEKNDLKDEK ASLKSEIDDL NIQYQQRVRT MFPWASVDYP VVMAPPSYPF 180 PVPMAMPPPG AIPMHPSMQP FPFFGNQNPG VIHNPCSTFV PYMTPNTMVE QQPTQHVTPP 240 AQPSSRSHAS GKEDSKNKSS GESKIEKTVD SNDVATDLEL KTPGSTADQD LSSGQRKLKK 300 SLRKENSNTE GSYSSRCSSS YSAQDSSSNS VVGGKKADDL DGRND |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15370 | 0.0 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109858557 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016691400.1 | 0.0 | PREDICTED: transcription factor bHLH121-like isoform X1 | ||||
Swissprot | Q9LT23 | 7e-90 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A1U8JM95 | 0.0 | A0A1U8JM95_GOSHI; transcription factor bHLH121-like isoform X1 | ||||
STRING | Gorai.005G252200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2353 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 2e-82 | bHLH family protein |
Publications ? help Back to Top | |||
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