PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2116
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 243aa    MW: 28138.5 Da    PI: 9.7669
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2116genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48.3e-1155995399
                 EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +++++ +v++ GW +F k++ L ++D +vF+ +g+++f   v++f+k
  Gh_D02G2116 55 CRNKRNMVIQHGWDQFYKDHSLGDNDLLVFRPNGNMCF--DVQIFDK 99
                 7888899*******************************..9**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-1152100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.51552100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-1253101IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-75599IPR003340B3 DNA binding domain
CDDcd100176.58E-85798No hitNo description
Gene3DG3DSA:2.40.330.107.5E-12152230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-11154229IPR015300DNA-binding pseudobarrel domain
CDDcd100174.09E-7157229No hitNo description
PROSITE profilePS508639.812159243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTTDLTSSSS SHMIPMPTIA GESHQLLFQL IYQKKYPLKP FSKVLRVIVG FITLCRNKRN  60
MVIQHGWDQF YKDHSLGDND LLVFRPNGNM CFDVQIFDKT GVERKTGPMT GKHRDCSVEI  120
KEEDDANQKN IPCPPVCKKK SKGKHCKAAI DFSSKFPYFK RCLTRCNVEH PFLLSVPSSF  180
AKAKYLPETK EFIFSATKQG YWKVGFVCSE IDKVFSHGWR KFVRDNELKS FQLSYHTEFN  240
QTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022725070.16e-63B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2P5R5941e-111A0A2P5R594_GOSBA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3542422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.15e-10B3 family protein